For a whole definition of all fields during the twoBit format, see this description from the resource code.
The numerous alignment format merchants a number of various alignments within a format that is not difficult to parse and comparatively very easy to browse. This structure shops multiple alignments in the DNA stage among entire genomes.
frames=multiz28wayFrames - Optional. Tells the browser which desk to grab the gene frames from. This is usually associated with an N-way alignment where the identify finishes from the string "Frames".
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n -- you'll find non-aligning bases while in the resource and the next aligning block begins in a brand new chromosome or scaffold that is certainly bridged by a series between nevertheless other blocks. The browser displays possibly only one line or perhaps a double line based upon how many bases are from the gap in between the bridging alignments.
difficulties for example forward and reverse strand directions, several pieces into the alignment, and so on.
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Some MAF documents could incorporate other optional line kinds: an "i" line containing information about precisely what is inside the check here aligned species DNA just before and after the straight away previous "s" line
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